PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 324aa    MW: 35180.2 Da    PI: 6.4438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008390.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16118164455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Do008390.1 118 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 164
                 6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.5E-20111174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-20111174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-16117168No hitNo description
PfamPF000108.5E-14118164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDEQGLGGFG GGRGAVRDHG REAMALLQHQ HQHQHQRRRQ LEEEEEEEAA ARRQMFGGVA  60
AFPAAAAALA LGYQQVDYGE EAGGLGDSDG GGSEPEPARE RTRAGSGSGS KRSRAAEVHN  120
LSEKRRRSRI NEKMKALQSL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGVYLNP  180
PYLSGALEPA QASQMFAALG GGNITASSSG AVVPPINQSS GAHQAFDPLN PPPQNQPLSF  240
VLPSVADKTI PELQFHLEPS QSHLRTFRMP ESSEMMLRGE IMAKHQLISG QERVSLPGND  300
MNPIRQESAI VNADHFDGCS RSKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436548.11e-160hypothetical protein SORBIDRAFT_10g004500
TrEMBLC5Z4V71e-160C5Z4V7_SORBI; Putative uncharacterized protein Sb10g004500
STRINGSb10g004500.11e-160(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-36bHLH family protein